Upcoming Event | December 15
OSPool User Training - High-Throughput Predicting Protein Structures with AlphaFold3 on the OSPool
Sign up for our training!
Interested in running hundreds-to-thousands of AlphaFold3 predictions?
This hands-on tutorial introduces researchers to running AlphaFold3 at large scale on the Open Science Pool (OSPool). Participants will learn how to prepare AlphaFold3 inputs, separate the workflow into CPU-based alignment generation and GPU-accelerated structure prediction, submit and manage jobs with HTCondor, and use containers and distributed data resources to build scalable and reproducible protein structure prediction workflows. Participants will also learn about the OSPool AlphaFold MSA Library, a service aimed at reducing researchers time-to-results by caching and reusing alignments across different jobs.
Prerequisites
- Basic understanding of HPC/HTC systems
- Experience with the command line
- Some familiarity with HTCondor and Alphafold3 is recommended but not required
Register here Other upcoming trainings
All User Training sessions are offered from 2:30-4:00pm EST on the third Tuesday of the month. It’s best to already have an active OSPool account to follow along with hands-on examples, but anyone can listen in by registering.
Who
OSPool users who want to learn about running Alphafold3 workflows on OSPool resources.
When
Tuesday, December 15 from 2:30-4:00pm EST
Where
Virtual
Questions?
We provide ongoing support via email at [email protected], and it’s never a bad idea to start by sending questions or issues via email. You can typically expect a first response within a few business hours.
